Variant report

Variant	rs16873937
Chromosome Location	chr8:106923469-106923470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10086651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107042	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111735	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs13439200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439490	0.87[ASW][hapmap];1.00[GIH][hapmap];1.00[YRI][hapmap]
rs16873944	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs16892417	1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs28434751	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28472579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4588821	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs56246046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57753827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58338040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6469016	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7009543	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73700515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7821554	1.00[CHD][hapmap]
rs7844560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283943	1.00[CHD][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297373	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9297376	1.00[CHD][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1019518	chr8:106923469-106959075	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106915200-106930200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:106921000-106929800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:106921200-106923600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:106921600-106925200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:106922600-106925000	Weak transcription	Fetal Kidney	kidney
6	chr8:106922800-106923800	Enhancers	NHDF-Ad	bronchial
7	chr8:106923200-106924800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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