Variant report

Variant	rs57753827
Chromosome Location	chr8:107061113-107061114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107043250..107045560-chr8:107060894..107062848,2	K562	blood:
2	chr8:107054893..107058550-chr8:107060735..107063239,3	K562	blood:
3	chr8:107044060..107046114-chr8:107059954..107062848,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097656	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs13439200	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874050	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs16892417	1.00[EUR][1000 genomes]
rs28434751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28472579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4588821	1.00[EUR][1000 genomes]
rs56246046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57832263	1.00[EUR][1000 genomes]
rs58338040	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61088261	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs7009543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73299555	1.00[EUR][1000 genomes]
rs73299558	1.00[EUR][1000 genomes]
rs73299567	1.00[EUR][1000 genomes]
rs73698371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700541	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7844560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283943	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297373	1.00[EUR][1000 genomes]
rs9297376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107058600-107067400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:107060000-107064000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:107060000-107067200	Weak transcription	Hela-S3	cervix
6	chr8:107060000-107067400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107060200-107063400	Weak transcription	HUVEC	blood vessel
8	chr8:107060400-107067000	Weak transcription	NHLF	lung
9	chr8:107060400-107067400	Weak transcription	Fetal Kidney	kidney
10	chr8:107060600-107067000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107060600-107067000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:107060600-107070800	Weak transcription	A549	lung
13	chr8:107060800-107064000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:107060800-107067200	Weak transcription	Osteobl	bone
15	chr8:107060800-107067400	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links