Variant report

Variant	rs16873975
Chromosome Location	chr8:106953550-106953551
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106952696..106955159-chr8:106958008..106960876,3	K562	blood:
2	chr8:106953058..106955739-chr8:107063560..107065111,2	K562	blood:
3	chr8:106932622..106934542-chr8:106950174..106953659,3	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10086651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107042	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111753	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs13439200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439259	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439428	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439490	1.00[YRI][hapmap]
rs16873937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873944	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873988	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs16892417	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs28434751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28472579	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4588821	0.88[YRI][hapmap];1.00[EUR][1000 genomes]
rs56246046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57753827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58338040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs7009543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73698371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7844560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283943	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297373	1.00[EUR][1000 genomes]
rs9297376	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1019518	chr8:106923469-106959075	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv515580	chr8:106925995-106956427	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106952400-106954000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:106952400-106957200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:106952800-106957400	Weak transcription	Osteobl	bone

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