Variant report

Variant	rs57722865
Chromosome Location	chr8:107159665-107159666
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107158620..107160797-chr8:107163959..107166094,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10086651	1.00[EUR][1000 genomes]
rs10097656	1.00[EUR][1000 genomes]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	1.00[EUR][1000 genomes]
rs10113453	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs13439200	1.00[EUR][1000 genomes]
rs13439259	1.00[EUR][1000 genomes]
rs13439428	1.00[EUR][1000 genomes]
rs16873975	1.00[EUR][1000 genomes]
rs16873988	1.00[EUR][1000 genomes]
rs16874050	1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs28472579	1.00[EUR][1000 genomes]
rs4588821	1.00[EUR][1000 genomes]
rs56246046	1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57753827	1.00[EUR][1000 genomes]
rs57832263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58338040	1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs60129439	1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs73299507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299555	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299558	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299567	1.00[EUR][1000 genomes]
rs73299601	1.00[AMR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73698620	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[EUR][1000 genomes]
rs73700541	1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7844560	1.00[EUR][1000 genomes]
rs9283943	1.00[EUR][1000 genomes]
rs9297376	1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107158200-107160800	Enhancers	Colon Smooth Muscle	Colon
2	chr8:107158800-107160600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:107158800-107161200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107159200-107159800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:107159200-107161200	Enhancers	Osteobl	bone
6	chr8:107159200-107162600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr8:107159400-107159800	Enhancers	Adipose Nuclei	Adipose
8	chr8:107159400-107159800	Enhancers	Fetal Heart	heart
9	chr8:107159400-107160000	Enhancers	Rectal Smooth Muscle	rectum
10	chr8:107159400-107160200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:107159400-107160400	Weak transcription	NH-A	brain
12	chr8:107159400-107160800	Enhancers	Stomach Smooth Muscle	stomach
13	chr8:107159400-107160800	Enhancers	HMEC	breast
14	chr8:107159400-107161000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:107159400-107161800	Enhancers	NHDF-Ad	bronchial
16	chr8:107159400-107162600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:107159600-107161400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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