Variant report

Variant	rs73700552
Chromosome Location	chr8:107068214-107068215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086651	1.00[EUR][1000 genomes]
rs10097656	1.00[EUR][1000 genomes]
rs10107042	1.00[EUR][1000 genomes]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112953	1.00[EUR][1000 genomes]
rs10113453	1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[EUR][1000 genomes]
rs13439088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439200	1.00[EUR][1000 genomes]
rs13439259	1.00[EUR][1000 genomes]
rs13439428	1.00[EUR][1000 genomes]
rs16873937	1.00[EUR][1000 genomes]
rs16873944	1.00[EUR][1000 genomes]
rs16873975	1.00[EUR][1000 genomes]
rs16873988	1.00[EUR][1000 genomes]
rs16874050	1.00[EUR][1000 genomes]
rs16874113	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892417	1.00[EUR][1000 genomes]
rs28434751	1.00[EUR][1000 genomes]
rs28472579	1.00[EUR][1000 genomes]
rs28552923	1.00[EUR][1000 genomes]
rs4588821	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56246046	1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57753827	1.00[EUR][1000 genomes]
rs57832263	1.00[EUR][1000 genomes]
rs58338040	1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	1.00[EUR][1000 genomes]
rs60129439	1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs7009543	1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73299555	1.00[EUR][1000 genomes]
rs73299558	1.00[EUR][1000 genomes]
rs73299567	1.00[EUR][1000 genomes]
rs73698371	1.00[EUR][1000 genomes]
rs73698372	1.00[EUR][1000 genomes]
rs73698605	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700515	1.00[EUR][1000 genomes]
rs73700521	1.00[EUR][1000 genomes]
rs73700539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700540	1.00[EUR][1000 genomes]
rs73700541	1.00[EUR][1000 genomes]
rs73700543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700544	1.00[EUR][1000 genomes]
rs73700549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844560	1.00[EUR][1000 genomes]
rs9283943	1.00[EUR][1000 genomes]
rs9297373	1.00[EUR][1000 genomes]
rs9297376	1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107059200-107072000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:107060600-107070800	Weak transcription	A549	lung
4	chr8:107067000-107069000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107067400-107070800	Weak transcription	Hela-S3	cervix
6	chr8:107067600-107070600	Weak transcription	NHLF	lung
7	chr8:107067600-107071200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:107067800-107070600	Weak transcription	K562	blood
9	chr8:107067800-107071200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107067800-107071800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:107068000-107068400	Enhancers	Fetal Kidney	kidney
12	chr8:107068000-107071000	Weak transcription	NHDF-Ad	bronchial
13	chr8:107068000-107073600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:107068200-107069200	Weak transcription	NH-A	brain
15	chr8:107068200-107070800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:107068200-107070800	Weak transcription	Osteobl	bone
17	chr8:107068200-107071600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:107068200-107072000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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