Variant report

Variant	rs16874113
Chromosome Location	chr8:107093921-107093922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106918347..106919345-chr8:107093305..107094021,2	MCF-7	breast:
2	chr8:107059219..107060866-chr8:107093801..107095788,2	K562	blood:
3	chr8:107085770..107087985-chr8:107092764..107094318,2	MCF-7	breast:
4	chr8:107071595..107074143-chr8:107092425..107094759,2	K562	blood:
5	chr8:107092680..107095598-chr8:107097096..107099230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251003	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086651	1.00[EUR][1000 genomes]
rs10097656	1.00[EUR][1000 genomes]
rs10107042	1.00[EUR][1000 genomes]
rs10111753	1.00[EUR][1000 genomes]
rs10112168	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10112953	1.00[EUR][1000 genomes]
rs10113453	1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	1.00[EUR][1000 genomes]
rs13439088	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439200	1.00[EUR][1000 genomes]
rs13439259	1.00[EUR][1000 genomes]
rs13439428	1.00[EUR][1000 genomes]
rs16873937	1.00[EUR][1000 genomes]
rs16873944	1.00[EUR][1000 genomes]
rs16873975	1.00[EUR][1000 genomes]
rs16873988	1.00[EUR][1000 genomes]
rs16874050	1.00[EUR][1000 genomes]
rs16892417	1.00[EUR][1000 genomes]
rs28434751	1.00[EUR][1000 genomes]
rs28472579	1.00[EUR][1000 genomes]
rs28552923	1.00[EUR][1000 genomes]
rs4588821	1.00[EUR][1000 genomes]
rs56246046	1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57753827	1.00[EUR][1000 genomes]
rs57832263	1.00[EUR][1000 genomes]
rs58338040	1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	1.00[EUR][1000 genomes]
rs60129439	1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs7009543	1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73299555	1.00[EUR][1000 genomes]
rs73299558	1.00[EUR][1000 genomes]
rs73299567	1.00[EUR][1000 genomes]
rs73698371	1.00[EUR][1000 genomes]
rs73698372	1.00[EUR][1000 genomes]
rs73698605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700515	1.00[EUR][1000 genomes]
rs73700521	1.00[EUR][1000 genomes]
rs73700539	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700540	1.00[EUR][1000 genomes]
rs73700541	1.00[EUR][1000 genomes]
rs73700543	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700544	1.00[EUR][1000 genomes]
rs73700549	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700552	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7844560	1.00[EUR][1000 genomes]
rs9283943	1.00[EUR][1000 genomes]
rs9297373	1.00[EUR][1000 genomes]
rs9297376	1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611842	chr8:107076421-107115482	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv611843	chr8:107088426-107104545	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv2830191	chr8:107088426-107115482	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107090400-107095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:107090600-107099000	Weak transcription	Esophagus	oesophagus
3	chr8:107092400-107094800	Enhancers	NH-A	brain
4	chr8:107092400-107095400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107092400-107096200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107092400-107096200	Enhancers	Osteobl	bone
7	chr8:107092600-107094200	Weak transcription	Brain Anterior Caudate	brain
8	chr8:107092800-107094200	Weak transcription	NHLF	lung
9	chr8:107092800-107094400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:107092800-107096400	Enhancers	Adipose Nuclei	Adipose
11	chr8:107093000-107095200	Enhancers	Dnd41	blood
12	chr8:107093200-107094200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr8:107093200-107095400	Enhancers	NHDF-Ad	bronchial
14	chr8:107093200-107095800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107093400-107094400	Weak transcription	NHEK	skin
16	chr8:107093400-107095000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:107093400-107095400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:107093400-107095600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr8:107093400-107096000	Enhancers	Brain Cingulate Gyrus	brain
20	chr8:107093400-107096200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:107093400-107096600	Enhancers	Colon Smooth Muscle	Colon
22	chr8:107093400-107096600	Enhancers	HUVEC	blood vessel
23	chr8:107093600-107094800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:107093600-107094800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:107093600-107095000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr8:107093600-107095000	Weak transcription	Ovary	ovary
27	chr8:107093600-107095000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr8:107093600-107095200	Weak transcription	Aorta	Aorta
29	chr8:107093600-107095800	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:107093600-107096000	Enhancers	Brain Substantia Nigra	brain
31	chr8:107093800-107094000	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr8:107093800-107094600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr8:107093800-107095000	Weak transcription	Stomach Mucosa	stomach
34	chr8:107093800-107096200	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr8:107093800-107096400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:107093800-107099000	Weak transcription	Gastric	stomach

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