Variant report

Variant	rs28472579
Chromosome Location	chr8:107007110-107007111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086651	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097656	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10107042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111753	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10112168	1.00[EUR][1000 genomes]
rs10112953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10113453	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1080610	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13438864	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439088	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13439200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13439428	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873937	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873975	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873988	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs16892417	1.00[EUR][1000 genomes]
rs28434751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4588821	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56246046	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56892538	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57753827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57832263	1.00[EUR][1000 genomes]
rs58338040	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs59633032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60129439	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs7009543	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73299555	1.00[EUR][1000 genomes]
rs73299558	1.00[EUR][1000 genomes]
rs73299567	1.00[EUR][1000 genomes]
rs73698371	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700521	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700541	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs7844560	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9283943	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297373	1.00[EUR][1000 genomes]
rs9297376	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107000800-107009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107006200-107007600	Enhancers	Stomach Mucosa	stomach
3	chr8:107006400-107007400	Enhancers	H9 Cell Line	embryonic stem cell
4	chr8:107006400-107007400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:107006400-107007400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:107006600-107008000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr8:107006800-107007200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:107007000-107007400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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