Variant report

Variant	rs73299567
Chromosome Location	chr8:107182820-107182821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10112168	1.00[EUR][1000 genomes]
rs1119015	1.00[EUR][1000 genomes]
rs13439088	1.00[EUR][1000 genomes]
rs16874050	1.00[EUR][1000 genomes]
rs16874113	1.00[EUR][1000 genomes]
rs28472579	1.00[EUR][1000 genomes]
rs4588821	1.00[EUR][1000 genomes]
rs57722865	1.00[EUR][1000 genomes]
rs57753827	1.00[EUR][1000 genomes]
rs57832263	1.00[EUR][1000 genomes]
rs58431748	1.00[EUR][1000 genomes]
rs60129439	1.00[EUR][1000 genomes]
rs61088261	1.00[EUR][1000 genomes]
rs61381952	1.00[AMR][1000 genomes]
rs6988642	1.00[EUR][1000 genomes]
rs73299507	1.00[EUR][1000 genomes]
rs73299555	1.00[EUR][1000 genomes]
rs73299558	1.00[EUR][1000 genomes]
rs73698605	1.00[EUR][1000 genomes]
rs73698620	1.00[EUR][1000 genomes]
rs73700539	1.00[EUR][1000 genomes]
rs73700540	1.00[EUR][1000 genomes]
rs73700541	1.00[EUR][1000 genomes]
rs73700543	1.00[EUR][1000 genomes]
rs73700544	1.00[EUR][1000 genomes]
rs73700549	1.00[EUR][1000 genomes]
rs73700552	1.00[EUR][1000 genomes]
rs9297377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107182000-107183000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:107182600-107183000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:107182600-107183000	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:107182600-107183200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:107182600-107183400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:107182600-107183400	Enhancers	A549	lung
7	chr8:107182600-107183600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:107182600-107183600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:107182600-107183600	Enhancers	K562	blood
10	chr8:107182800-107183200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:107182800-107183400	Enhancers	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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