Variant report

Variant	rs28407873
Chromosome Location	chr8:106834221-106834222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr8:106834012-106834398	K562	blood:	n/a	n/a
2	FOS	chr8:106834039-106834393	MCF10A-Er-Src	breast:	n/a	chr8:106834218-106834229
3	FOSL1	chr8:106833973-106834367	K562	blood:	n/a	n/a
4	ATF1	chr8:106833739-106834298	K562	blood:	n/a	n/a
5	MAX	chr8:106834031-106834315	NB4	blood:	n/a	n/a
6	STAT3	chr8:106834134-106834307	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr8:106834049-106834378	HUVEC	blood vessel:	n/a	chr8:106834218-106834229
8	GATA3	chr8:106833795-106834450	SK-N-SH	brain:	n/a	n/a
9	CTCF	chr8:106834100-106834250	HPF	lung:	n/a	n/a
10	JUN	chr8:106833714-106834408	K562	blood:	n/a	n/a
11	ATF3	chr8:106834003-106834320	K562	blood:	n/a	n/a
12	POLR2A	chr8:106834043-106834365	U87	brain:	n/a	n/a
13	MYC	chr8:106833825-106834285	NB4	blood:	n/a	n/a
14	FOS	chr8:106834039-106834389	MCF10A-Er-Src	breast:	n/a	chr8:106834218-106834229
15	RUNX3	chr8:106834095-106834323	GM12878	blood:	n/a	n/a
16	ELF1	chr8:106833967-106834310	K562	blood:	n/a	n/a
17	JUND	chr8:106833659-106834396	SK-N-SH	brain:	n/a	n/a
18	FOS	chr8:106834039-106834407	MCF10A-Er-Src	breast:	n/a	chr8:106834218-106834229
19	FOSL1	chr8:106833931-106834470	HCT-116	colon:	n/a	n/a
20	STAT3	chr8:106834144-106834399	MCF10A-Er-Src	breast:	n/a	n/a
21	MYC	chr8:106834068-106834347	MCF10A-Er-Src	breast:	n/a	n/a
22	CTCF	chr8:106834080-106834230	HMEC	breast:	n/a	n/a
23	MAX	chr8:106834065-106834265	K562	blood:	n/a	n/a
24	JUN	chr8:106834104-106834385	K562	blood:	n/a	n/a
25	CTCF	chr8:106834080-106834230	HMF	breast:	n/a	n/a
26	FOS	chr8:106834042-106834403	MCF10A-Er-Src	breast:	n/a	chr8:106834218-106834229
27	GATA3	chr8:106833890-106834341	SK-N-SH	brain:	n/a	n/a
28	FOSL2	chr8:106833986-106834394	SK-N-SH	brain:	n/a	n/a
29	MYC	chr8:106834145-106834406	MCF10A-Er-Src	breast:	n/a	n/a
30	STAT3	chr8:106834071-106834352	MCF10A-Er-Src	breast:	n/a	n/a
31	GATA2	chr8:106833974-106834335	HUVEC	blood vessel:	n/a	n/a
32	STAT3	chr8:106834153-106834345	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000253526	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10093619	1.00[ASN][1000 genomes]
rs10095852	1.00[ASN][1000 genomes]
rs10096236	1.00[ASN][1000 genomes]
rs10098997	1.00[ASN][1000 genomes]
rs10101738	1.00[ASN][1000 genomes]
rs10429425	1.00[ASN][1000 genomes]
rs10505085	1.00[ASN][1000 genomes]
rs11984472	0.81[AFR][1000 genomes]
rs11991415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472350	1.00[ASN][1000 genomes]
rs1603359	1.00[ASN][1000 genomes]
rs16873732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873752	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873753	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525248	1.00[ASN][1000 genomes]
rs28625324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35907960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57906084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58775053	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60567932	1.00[ASN][1000 genomes]
rs61557396	1.00[ASN][1000 genomes]
rs6469016	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6981162	1.00[ASN][1000 genomes]
rs6981522	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991211	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001221	1.00[ASN][1000 genomes]
rs7002867	1.00[ASN][1000 genomes]
rs7007638	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310920	1.00[ASN][1000 genomes]
rs7341576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698357	1.00[ASN][1000 genomes]
rs73698359	1.00[ASN][1000 genomes]
rs73698360	1.00[ASN][1000 genomes]
rs73698362	1.00[ASN][1000 genomes]
rs73698366	1.00[ASN][1000 genomes]
rs7826040	1.00[ASN][1000 genomes]
rs920628	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106833600-106834400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:106833600-106834400	Enhancers	NH-A	brain
3	chr8:106833600-106834800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:106833600-106834800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:106833800-106834400	Enhancers	NHDF-Ad	bronchial
6	chr8:106833800-106834800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:106833800-106834800	Enhancers	HMEC	breast
8	chr8:106834000-106834400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:106834000-106834400	Enhancers	NHEK	skin
10	chr8:106834000-106834400	Enhancers	Osteobl	bone

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