Variant report

Variant	rs920628
Chromosome Location	chr8:106813672-106813673
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:106812921..106815955-chr8:106816996..106820914,3	K562	blood:
2	chr8:106807823..106810628-chr8:106812479..106815151,2	K562	blood:
3	chr8:106808869..106810668-chr8:106812697..106814758,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10093619	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10095852	1.00[ASN][1000 genomes]
rs10096236	1.00[ASN][1000 genomes]
rs10098997	1.00[ASN][1000 genomes]
rs10101738	1.00[ASN][1000 genomes]
rs10111735	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap]
rs10429425	1.00[ASN][1000 genomes]
rs10505085	1.00[ASN][1000 genomes]
rs11991415	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13439490	1.00[GIH][hapmap]
rs1442320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472350	1.00[ASN][1000 genomes]
rs1603359	1.00[ASN][1000 genomes]
rs16873732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892417	1.00[CHD][hapmap];1.00[GIH][hapmap]
rs28407873	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525248	1.00[ASN][1000 genomes]
rs28625324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35907960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57906084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053906	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58775053	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60567932	1.00[ASN][1000 genomes]
rs61557396	1.00[ASN][1000 genomes]
rs6469016	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6981162	1.00[ASN][1000 genomes]
rs6981522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991211	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001221	1.00[ASN][1000 genomes]
rs7002867	1.00[ASN][1000 genomes]
rs7007638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309061	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310920	1.00[ASN][1000 genomes]
rs7341576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698357	1.00[ASN][1000 genomes]
rs73698359	1.00[ASN][1000 genomes]
rs73698360	1.00[ASN][1000 genomes]
rs73698362	1.00[ASN][1000 genomes]
rs73698366	1.00[ASN][1000 genomes]
rs7821554	1.00[CHD][hapmap]
rs7826040	1.00[ASN][1000 genomes]
rs9283943	1.00[CHD][hapmap]
rs9297376	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106791800-106813800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:106796600-106823600	Weak transcription	HUVEC	blood vessel
3	chr8:106800200-106814000	Weak transcription	Fetal Heart	heart
4	chr8:106805000-106817200	Weak transcription	Fetal Brain Male	brain
5	chr8:106807600-106814000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:106808000-106814400	Weak transcription	Brain Angular Gyrus	brain
7	chr8:106808600-106816000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:106808800-106815400	Strong transcription	Stomach Smooth Muscle	stomach
9	chr8:106809000-106815600	Strong transcription	Adipose Nuclei	Adipose
10	chr8:106809000-106815800	Strong transcription	Ovary	ovary
11	chr8:106810400-106813800	Weak transcription	Fetal Brain Female	brain
12	chr8:106810800-106814000	Weak transcription	Brain Hippocampus Middle	brain
13	chr8:106811000-106816400	Weak transcription	Brain Substantia Nigra	brain
14	chr8:106811200-106824000	Weak transcription	Thymus	Thymus
15	chr8:106811800-106815200	Strong transcription	Fetal Lung	lung
16	chr8:106811800-106816200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:106811800-106816400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:106812200-106814000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:106812200-106815600	Weak transcription	Colonic Mucosa	Colon
20	chr8:106812400-106815200	Strong transcription	Aorta	Aorta
21	chr8:106812400-106815200	Weak transcription	NHLF	lung
22	chr8:106812400-106815800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:106812800-106815600	Strong transcription	Left Ventricle	heart
24	chr8:106813000-106815400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:106813000-106815600	Strong transcription	NH-A	brain
26	chr8:106813200-106813800	Strong transcription	Colon Smooth Muscle	Colon
27	chr8:106813200-106814000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:106813200-106814000	Genic enhancers	Fetal Muscle Leg	muscle
29	chr8:106813200-106814600	Strong transcription	Spleen	Spleen
30	chr8:106813200-106815000	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr8:106813200-106815000	Strong transcription	Gastric	stomach
32	chr8:106813200-106815000	Genic enhancers	Skeletal Muscle Female	skeletal muscle
33	chr8:106813200-106815200	Strong transcription	Brain Anterior Caudate	brain
34	chr8:106813200-106815600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr8:106813200-106815600	Strong transcription	Right Ventricle	heart
36	chr8:106813400-106814000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
37	chr8:106813400-106814600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:106813400-106815000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:106813400-106815600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:106813400-106815600	Strong transcription	Fetal Muscle Trunk	muscle
41	chr8:106813400-106815600	Strong transcription	Fetal Stomach	stomach
42	chr8:106813400-106815600	Strong transcription	K562	blood
43	chr8:106813400-106815800	Weak transcription	Fetal Kidney	kidney
44	chr8:106813400-106816000	Weak transcription	HSMMtube	muscle
45	chr8:106813400-106817200	Weak transcription	Placenta	Placenta
46	chr8:106813600-106814600	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr8:106813600-106815600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr8:106813600-106817000	Weak transcription	Lung	lung
49	chr8:106813600-106819200	Weak transcription	Psoas Muscle	Psoas

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