Variant report

Variant	rs1472350
Chromosome Location	chr8:106899007-106899008
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:10785707..10786527-chr8:106898296..106899109,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10093619	1.00[ASN][1000 genomes]
rs10095852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10096236	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10098997	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10101738	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10429425	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10505085	1.00[ASN][1000 genomes]
rs11991415	1.00[ASN][1000 genomes]
rs11995760	1.00[ASN][1000 genomes]
rs1442320	1.00[ASN][1000 genomes]
rs1603359	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16873732	1.00[ASN][1000 genomes]
rs16873752	1.00[ASN][1000 genomes]
rs16873753	1.00[ASN][1000 genomes]
rs28407873	1.00[ASN][1000 genomes]
rs28525248	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28571661	0.92[AFR][1000 genomes]
rs28625324	1.00[ASN][1000 genomes]
rs28840445	1.00[ASN][1000 genomes]
rs35907960	1.00[ASN][1000 genomes]
rs35998713	1.00[ASN][1000 genomes]
rs57906084	1.00[ASN][1000 genomes]
rs58053906	1.00[ASN][1000 genomes]
rs58594149	1.00[ASN][1000 genomes]
rs58775053	1.00[ASN][1000 genomes]
rs60567932	1.00[ASN][1000 genomes]
rs61557396	1.00[ASN][1000 genomes]
rs6981162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6981522	1.00[ASN][1000 genomes]
rs6991211	1.00[ASN][1000 genomes]
rs6995222	1.00[ASN][1000 genomes]
rs7001221	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7002867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7007638	1.00[ASN][1000 genomes]
rs73309061	1.00[ASN][1000 genomes]
rs73310920	1.00[ASN][1000 genomes]
rs7341576	1.00[ASN][1000 genomes]
rs73698307	1.00[ASN][1000 genomes]
rs73698316	1.00[ASN][1000 genomes]
rs73698357	1.00[ASN][1000 genomes]
rs73698359	1.00[ASN][1000 genomes]
rs73698360	1.00[ASN][1000 genomes]
rs73698362	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73698366	1.00[ASN][1000 genomes]
rs7826040	1.00[ASN][1000 genomes]
rs920628	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv891261	chr8:106880649-106932634	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106899000-106899200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:106899000-106899200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:106899000-106899800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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