Variant report

Variant	rs35907960
Chromosome Location	chr8:106824053-106824054
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:106817558..106821579-chr8:106821916..106825672,4	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10093619	1.00[ASN][1000 genomes]
rs10095852	1.00[ASN][1000 genomes]
rs10096236	1.00[ASN][1000 genomes]
rs10098997	1.00[ASN][1000 genomes]
rs10101738	1.00[ASN][1000 genomes]
rs10429425	1.00[ASN][1000 genomes]
rs10505085	1.00[ASN][1000 genomes]
rs11991415	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11995760	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442320	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472350	1.00[ASN][1000 genomes]
rs1603359	1.00[ASN][1000 genomes]
rs16873732	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873752	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28407873	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28525248	1.00[ASN][1000 genomes]
rs28625324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28840445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35998713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57906084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58053906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58594149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58775053	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60567932	1.00[ASN][1000 genomes]
rs61557396	1.00[ASN][1000 genomes]
rs6469016	1.00[EUR][1000 genomes]
rs6981162	1.00[ASN][1000 genomes]
rs6981522	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991211	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6995222	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001221	1.00[ASN][1000 genomes]
rs7002867	1.00[ASN][1000 genomes]
rs7007638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73309061	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73310920	1.00[ASN][1000 genomes]
rs7341576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73698357	1.00[ASN][1000 genomes]
rs73698359	1.00[ASN][1000 genomes]
rs73698360	1.00[ASN][1000 genomes]
rs73698362	1.00[ASN][1000 genomes]
rs73698366	1.00[ASN][1000 genomes]
rs7826040	1.00[ASN][1000 genomes]
rs920628	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106815600-106833600	Weak transcription	NH-A	brain
2	chr8:106815800-106833800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:106824000-106824200	Enhancers	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links