Variant report
| Variant | rs11989127 |
|---|---|
| Chromosome Location | chr8:61362037-61362038 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10504309 | 1.00[EUR][1000 genomes] |
| rs11987507 | 1.00[AMR][1000 genomes] |
| rs11988531 | 1.00[AMR][1000 genomes] |
| rs11992608 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11993479 | 1.00[AMR][1000 genomes] |
| rs11994058 | 1.00[AMR][1000 genomes] |
| rs11996808 | 1.00[AMR][1000 genomes] |
| rs1534849 | 1.00[AMR][1000 genomes] |
| rs16926108 | 1.00[EUR][1000 genomes] |
| rs41272433 | 1.00[EUR][1000 genomes] |
| rs55896615 | 1.00[AMR][1000 genomes] |
| rs7004263 | 1.00[EUR][1000 genomes] |
| rs7011437 | 1.00[EUR][1000 genomes] |
| rs73250102 | 1.00[EUR][1000 genomes] |
| rs73251503 | 1.00[EUR][1000 genomes] |
| rs7814111 | 1.00[EUR][1000 genomes] |
| rs7827147 | 1.00[EUR][1000 genomes] |
| rs7841769 | 1.00[EUR][1000 genomes] |
| rs7841906 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv917756 | chr8:60942299-61862796 | Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 74 gene(s) | inside rSNPs | diseases |
| 2 | nsv971314 | chr8:61359401-61436209 | Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:61361600-61367000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
