Variant report

Variant	rs11990006
Chromosome Location	chr8:126414560-126414561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10087340	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28610248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28674919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73342874	1.00[EUR][1000 genomes]
rs73342875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410448	chr8:126339813-126418053	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126404400-126424400	Weak transcription	Spleen	Spleen
2	chr8:126414000-126415400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:126414000-126422800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr8:126414400-126417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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