Variant report

Variant	rs11990925
Chromosome Location	chr8:113005332-113005333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10505167	0.94[AFR][1000 genomes]
rs11985319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990086	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996043	1.00[AMR][1000 genomes]
rs16882963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883055	1.00[AMR][1000 genomes]
rs55703710	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57463310	0.90[AFR][1000 genomes]
rs60791409	0.90[AFR][1000 genomes]
rs61462060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705520	0.90[AFR][1000 genomes]
rs73705537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705785	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813171	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891320	chr8:112931908-113054458	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv465765	chr8:112977379-113060632	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv611907	chr8:112977379-113060632	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113003800-113006400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:113004000-113006400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:113005200-113005600	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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