Variant report

Variant	rs11985319
Chromosome Location	chr8:113103641-113103642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11985396	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11990925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11996043	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882963	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882972	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882982	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882993	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883055	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883283	0.82[YRI][hapmap]
rs16883284	0.82[YRI][hapmap]
rs16883286	0.81[YRI][hapmap]
rs16883307	0.82[YRI][hapmap]
rs16883312	0.82[YRI][hapmap]
rs16883323	0.82[YRI][hapmap]
rs16883361	0.81[YRI][hapmap]
rs2111428	0.81[YRI][hapmap]
rs4551387	0.82[YRI][hapmap]
rs55703710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61462060	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73705785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813171	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826664	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv891321	chr8:112978128-113229425	Active TSS ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv891322	chr8:112978128-113267916	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113095400-113104200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:113102600-113104000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:113102800-113104200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links