Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16883283	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883284	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883286	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883307	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883312	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883361	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2111428	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2193430	1.00[AMR][1000 genomes]
rs2353787	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs4551387	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58628028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60814517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706795	1.00[AFR][1000 genomes]
rs73709203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826664	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113275000-113276000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:113275000-113276200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:113275000-113276200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:113275200-113276200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:113275200-113276200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:113275400-113280200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:113275600-113276400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:113275800-113276200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: