Variant report

Variant	rs73700899
Chromosome Location	chr8:113306865-113306866
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16883283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883284	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883286	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883307	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883312	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2111428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2193430	1.00[AMR][1000 genomes]
rs2353787	0.87[AFR][1000 genomes]
rs4551387	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56021071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58628028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60814517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706795	0.98[AFR][1000 genomes]
rs73709203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709208	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826664	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113288800-113331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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