Variant report
| Variant | rs16883307 |
|---|---|
| Chromosome Location | chr8:113263374-113263375 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs16883283 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16883284 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16883286 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16883312 | 1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16883323 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16883361 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2111428 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2193430 | 1.00[AMR][1000 genomes] |
| rs2353787 | 0.94[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs4551387 | 1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56021071 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56122147 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57335921 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58628028 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60814517 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73700899 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73706795 | 0.96[AFR][1000 genomes] |
| rs73709203 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709208 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709210 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7826664 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533857 | chr8:112819659-113801258 | Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv891322 | chr8:112978128-113267916 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022457 | chr8:113071774-113811177 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv982152 | chr8:113261900-113265476 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:113235200-113265400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr8:113259400-113266800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
