Variant report

Variant	rs56021071
Chromosome Location	chr8:113270909-113270910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16883283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883307	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883312	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16883361	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2111428	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2193430	1.00[AMR][1000 genomes]
rs2353787	0.90[AFR][1000 genomes]
rs4551387	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56122147	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335921	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58628028	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60814517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73700899	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706795	1.00[AFR][1000 genomes]
rs73709203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113267600-113275000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:113268600-113271400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:113268800-113275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:113269200-113275000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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