Variant report

Variant	rs11990983
Chromosome Location	chr8:114510531-114510532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11991807	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56018925	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56680932	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56961237	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701479	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701480	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73701481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7462917	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114509400-114511000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:114509600-114510800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:114509800-114510800	Enhancers	Dnd41	blood
4	chr8:114509800-114511000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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