Variant report

Variant	rs1199184
Chromosome Location	chr11:63271098-63271099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr11:63270943-63271432	HL-60	blood:	n/a	chr11:63271109-63271122
2	SPI1	chr11:63270990-63271209	K562	blood:	n/a	chr11:63271109-63271122
3	POLR2A	chr11:63270898-63271421	HL-60	blood:	n/a	n/a
4	SPI1	chr11:63270854-63271491	HL-60	blood:	n/a	chr11:63271109-63271122
5	GABPA	chr11:63270912-63271437	HL-60	blood:	n/a	n/a
6	MAX	chr11:63270898-63271398	NB4	blood:	n/a	n/a
7	MYC	chr11:63270889-63271355	NB4	blood:	n/a	n/a
8	POLR2A	chr11:63270868-63271446	HL-60	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63268520..63271512-chr11:63274116..63276524,3	MCF-7	breast:

Variant related genes	Relation type
LGALS12	TF binding region
ENSG00000133317	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11231539	1.00[LWK][hapmap]
rs12787302	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv3364622	chr11:63247425-63274716	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63268000-63271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:63268200-63271600	Weak transcription	Right Atrium	heart
3	chr11:63268400-63271200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:63268400-63271600	Weak transcription	Adipose Nuclei	Adipose
5	chr11:63268800-63271600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:63269200-63273400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:63269200-63273400	Enhancers	Primary hematopoietic stem cells	blood
8	chr11:63269400-63275600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr11:63269600-63271200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:63269600-63271800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
11	chr11:63269600-63273000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:63269600-63273400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:63269600-63273400	Enhancers	K562	blood
14	chr11:63269600-63274400	Enhancers	Liver	Liver
15	chr11:63269800-63273800	Enhancers	Pancreas	Pancrea
16	chr11:63269800-63273800	Enhancers	Stomach Mucosa	stomach
17	chr11:63270000-63271600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:63270000-63272200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:63270000-63273000	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:63270000-63273400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:63270000-63273400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:63270200-63272400	Weak transcription	Fetal Thymus	thymus
23	chr11:63270200-63272800	Weak transcription	Primary T cells from cord blood	blood
24	chr11:63270200-63273200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:63270200-63273400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:63270400-63271200	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr11:63270400-63272200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr11:63270400-63273400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr11:63270400-63273400	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:63270800-63272400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr11:63270800-63272600	Enhancers	H9 Cell Line	embryonic stem cell
32	chr11:63271000-63271600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:63271000-63272200	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr11:63271000-63272400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr11:63271000-63272600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:63271000-63273600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr11:63271000-63274000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:63271000-63275000	Enhancers	H1 Cell Line	embryonic stem cell

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