Variant report

Variant	rs12787302
Chromosome Location	chr11:63308530-63308531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63300114..63303673-chr11:63307558..63310694,4	K562	blood:
2	chr11:63301815..63304530-chr11:63307554..63310517,4	K562	blood:
3	chr11:63307907..63312883-chr11:63312898..63316693,5	K562	blood:

Variant related genes	Relation type
ENSG00000133321	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11231539	1.00[LWK][hapmap]
rs1199184	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63301000-63310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63305000-63310000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:63305200-63314600	Weak transcription	Fetal Kidney	kidney
4	chr11:63305400-63310000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:63305400-63310800	Weak transcription	GM12878-XiMat	blood
6	chr11:63305400-63312000	Weak transcription	Fetal Intestine Small	intestine
7	chr11:63305400-63319000	Weak transcription	Aorta	Aorta
8	chr11:63305800-63310800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr11:63305800-63312000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:63305800-63319200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:63306000-63308600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:63306000-63309000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:63306000-63312000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:63306000-63312000	Weak transcription	Fetal Stomach	stomach
15	chr11:63306200-63309000	Genic enhancers	Primary T cells fromperipheralblood	blood
16	chr11:63306200-63309200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:63306200-63309800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr11:63306200-63312200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:63306400-63310600	Weak transcription	Liver	Liver
20	chr11:63306400-63311000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr11:63306400-63312000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr11:63306400-63312600	Weak transcription	Stomach Mucosa	stomach
23	chr11:63306400-63313800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr11:63306400-63316000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:63306400-63317000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:63306400-63318600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr11:63306400-63318800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr11:63306600-63311800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr11:63306600-63312000	Weak transcription	Placenta	Placenta
30	chr11:63306600-63312000	Weak transcription	Left Ventricle	heart
31	chr11:63306600-63312000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr11:63306600-63312200	Weak transcription	Small Intestine	intestine
33	chr11:63306600-63312400	Weak transcription	Colonic Mucosa	Colon
34	chr11:63306600-63313000	Weak transcription	Gastric	stomach
35	chr11:63306600-63314000	Weak transcription	Fetal Thymus	thymus
36	chr11:63306800-63308800	Strong transcription	Primary T cells from cord blood	blood
37	chr11:63306800-63309200	Enhancers	Primary T killer memory cells from peripheral blood	blood
38	chr11:63306800-63311600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
39	chr11:63306800-63312200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:63306800-63312400	Weak transcription	Esophagus	oesophagus
41	chr11:63306800-63318000	Weak transcription	Dnd41	blood
42	chr11:63306800-63327600	Weak transcription	Pancreas	Pancrea
43	chr11:63307000-63311000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr11:63307000-63312000	Weak transcription	Lung	lung
45	chr11:63307000-63312000	Weak transcription	Right Ventricle	heart
46	chr11:63307000-63312000	Weak transcription	Spleen	Spleen
47	chr11:63307000-63319000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:63307600-63308600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr11:63307600-63312000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:63307800-63310400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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