Variant report

Variant	rs11992829
Chromosome Location	chr8:67665919-67665920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11988681	1.00[AMR][1000 genomes]
rs11991125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017659	1.00[AMR][1000 genomes]
rs7001796	1.00[AMR][1000 genomes]
rs73691570	1.00[AMR][1000 genomes]
rs73691574	1.00[AMR][1000 genomes]
rs73691576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691581	1.00[AMR][1000 genomes]
rs73691585	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1026746	chr8:67639626-67794164	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67641200-67666200	Weak transcription	Pancreas	Pancrea
2	chr8:67647800-67671000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:67652200-67672400	Weak transcription	Fetal Intestine Small	intestine
4	chr8:67656400-67679000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:67656600-67670400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:67660800-67667800	Weak transcription	Brain Angular Gyrus	brain
7	chr8:67661000-67668000	Weak transcription	Brain Substantia Nigra	brain
8	chr8:67661000-67673400	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:67664600-67668200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:67664600-67686400	Weak transcription	Right Atrium	heart
11	chr8:67664800-67670800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:67665000-67671600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr8:67665200-67666000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:67665800-67666400	Weak transcription	K562	blood
15	chr8:67665800-67667000	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr8:67665800-67673000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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