Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:125922613..125924246-chr8:125927138..125929372,2	MCF-7	breast:
2	chr8:125869478..125872586-chr8:125926416..125930050,3	MCF-7	breast:
3	chr8:125919411..125921698-chr8:125926502..125928708,2	MCF-7	breast:
4	chr1:117602865..117605635-chr8:125927109..125929309,2	MCF-7	breast:
5	chr8:125903181..125907429-chr8:125925929..125929993,4	K562	blood:
6	chr8:125864922..125866655-chr8:125925294..125927990,2	MCF-7	breast:
7	chr8:125927702..125929777-chr8:125936123..125937814,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255080	Chromatin interaction
ENSG00000116830	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1052291	0.80[ASN][1000 genomes]
rs11775219	0.80[ASN][1000 genomes]
rs11776147	0.87[ASN][1000 genomes]
rs11777190	0.80[ASN][1000 genomes]
rs11778786	0.80[ASN][1000 genomes]
rs11778814	0.80[ASN][1000 genomes]
rs11780103	0.90[ASN][1000 genomes]
rs11780865	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs11783773	0.90[ASN][1000 genomes]
rs11787203	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17304872	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.80[ASN][1000 genomes]
rs17305012	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17396442	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2077670	1.00[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap]
rs56073554	0.80[ASN][1000 genomes]
rs6470319	0.88[ASN][1000 genomes]
rs6989608	0.80[ASN][1000 genomes]
rs6990611	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs7009560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7464449	0.80[ASN][1000 genomes]
rs7814843	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9785063	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125925600-125931200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr8:125926200-125929600	Weak transcription	HepG2	liver

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