Variant report
| Variant | rs11994178 |
|---|---|
| Chromosome Location | chr8:111563316-111563317 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | NR2F2 | chr8:111563220-111563842 | MCF-7 | breast: | n/a | n/a |
| 2 | GATA3 | chr8:111563157-111564230 | MCF-7 | breast: | n/a | chr8:111564055-111564063 |
| 3 | GATA3 | chr8:111563226-111563974 | MCF-7 | breast: | n/a | n/a |
| 4 | SIN3AK20 | chr8:111563188-111563884 | MCF-7 | breast: | n/a | n/a |
| 5 | HDAC2 | chr8:111563245-111563732 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253107 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11985542 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11995877 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13250442 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs13251031 | 0.97[EUR][1000 genomes] |
| rs13252314 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13253273 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13255000 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs13273764 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13278891 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13279857 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs13280801 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs16880802 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35909617 | 0.90[EUR][1000 genomes] |
| rs4486175 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs58445806 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs6980765 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs726685 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7828750 | 0.80[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs9942808 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024499 | chr8:111190482-111691474 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv539717 | chr8:111190482-111691474 | ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv611882 | chr8:111342240-111722469 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv1031119 | chr8:111367939-111720763 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv891291 | chr8:111462136-111681660 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 6 | nsv891292 | chr8:111478321-111673039 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 7 | esv2761460 | chr8:111506457-111607147 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
