Variant report
Variant | rs6980765 |
---|---|
Chromosome Location | chr8:111616532-111616533 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | GATA3 | chr8:111616164-111616773 | MCF-7 | breast: | n/a | n/a |
2 | TCF7L2 | chr8:111616340-111616630 | MCF-7 | breast: | n/a | chr8:111616504-111616518 |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:111614672..111616882-chr8:111628243..111630115,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000253122 | TF binding region |
rs_ID | r2[population] |
---|---|
rs11985542 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs11994178 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11995877 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs13250442 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs13251031 | 0.93[EUR][1000 genomes] |
rs13252314 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13253273 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13255000 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs13273764 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13278891 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13279857 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs13280801 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs1353209 | 0.89[AFR][1000 genomes] |
rs16880802 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs35909617 | 0.86[EUR][1000 genomes] |
rs4486175 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs58445806 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs726685 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs73314791 | 0.91[AMR][1000 genomes] |
rs7828750 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs9942808 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024499 | chr8:111190482-111691474 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv539717 | chr8:111190482-111691474 | ZNF genes & repeats Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
3 | nsv611882 | chr8:111342240-111722469 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv1031119 | chr8:111367939-111720763 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
5 | nsv891291 | chr8:111462136-111681660 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv891292 | chr8:111478321-111673039 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
7 | nsv831422 | chr8:111578949-111755170 | Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
8 | nsv1027659 | chr8:111585843-111875753 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
9 | nsv1025390 | chr8:111605571-111806020 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
10 | nsv539718 | chr8:111605571-111806020 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |