Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:69489841..69490343-chr8:69685997..69686537,2	MCF-7	breast:
2	chr8:69489517..69490141-chr8:69685805..69686684,3	MCF-7	breast:
3	chr8:69684482..69688368-chr8:69762278..69766064,4	MCF-7	breast:
4	chr8:69684731..69687775-chr8:69763630..69766534,4	MCF-7	breast:
5	chr8:69488341..69491069-chr8:69684855..69686356,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10099614	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957447	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11993861	0.92[ASN][1000 genomes]
rs11995110	0.97[ASN][1000 genomes]
rs12675214	0.95[ASN][1000 genomes]
rs12675220	0.95[ASN][1000 genomes]
rs2953945	0.81[ASN][1000 genomes]
rs2953947	0.81[ASN][1000 genomes]
rs2953948	0.81[ASN][1000 genomes]
rs2953949	0.81[ASN][1000 genomes]
rs2953950	0.81[ASN][1000 genomes]
rs2953951	0.81[ASN][1000 genomes]
rs2953952	0.81[ASN][1000 genomes]
rs2978241	0.81[ASN][1000 genomes]
rs2978242	0.81[ASN][1000 genomes]
rs34283177	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4374973	0.95[ASN][1000 genomes]
rs4401840	0.95[ASN][1000 genomes]
rs5022152	0.95[ASN][1000 genomes]
rs62520981	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6983604	0.91[ASN][1000 genomes]
rs6984482	0.95[ASN][1000 genomes]
rs6998182	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7016624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73270234	0.93[ASN][1000 genomes]
rs7461173	0.95[ASN][1000 genomes]
rs7464182	0.95[ASN][1000 genomes]
rs7464209	0.95[ASN][1000 genomes]
rs7813466	0.81[ASN][1000 genomes]
rs7817788	0.95[ASN][1000 genomes]
rs7833828	0.95[ASN][1000 genomes]
rs7834286	0.93[ASN][1000 genomes]
rs7843991	0.95[ASN][1000 genomes]
rs7844031	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890986	chr8:69647914-69704366	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv519549	chr8:69682388-69687852	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69675200-69686200	Weak transcription	Fetal Lung	lung
2	chr8:69683000-69688000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:69686000-69686400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:69686000-69686400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: