Variant report
Variant | rs7016624 |
---|---|
Chromosome Location | chr8:69685886-69685887 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:69489517..69490141-chr8:69685805..69686684,3 | MCF-7 | breast: | |
2 | chr8:69684482..69688368-chr8:69762278..69766064,4 | MCF-7 | breast: | |
3 | chr8:69684731..69687775-chr8:69763630..69766534,4 | MCF-7 | breast: | |
4 | chr8:69488341..69491069-chr8:69684855..69686356,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000254337 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10099614 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs10957447 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11993861 | 0.90[ASN][1000 genomes] |
rs11994264 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11995110 | 0.94[ASN][1000 genomes] |
rs12675214 | 0.93[ASN][1000 genomes] |
rs12675220 | 0.93[ASN][1000 genomes] |
rs34283177 | 0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4374973 | 0.93[ASN][1000 genomes] |
rs4401840 | 0.93[ASN][1000 genomes] |
rs5022152 | 0.93[ASN][1000 genomes] |
rs62520981 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6983604 | 0.89[ASN][1000 genomes] |
rs6984482 | 0.93[ASN][1000 genomes] |
rs6998182 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs73270234 | 0.93[ASN][1000 genomes] |
rs7461173 | 0.93[ASN][1000 genomes] |
rs7464182 | 0.93[ASN][1000 genomes] |
rs7464209 | 0.93[ASN][1000 genomes] |
rs7817788 | 0.93[ASN][1000 genomes] |
rs7833828 | 0.93[ASN][1000 genomes] |
rs7834286 | 0.91[ASN][1000 genomes] |
rs7843991 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv831349 | chr8:69555461-69733515 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
2 | nsv465703 | chr8:69641287-69814578 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv611462 | chr8:69641287-69814578 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv890986 | chr8:69647914-69704366 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv1017131 | chr8:69676989-69792515 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv519549 | chr8:69682388-69687852 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:69675200-69686200 | Weak transcription | Fetal Lung | lung |
2 | chr8:69683000-69688000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |