Variant report

Variant	rs11995327
Chromosome Location	chr8:106740978-106740979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11989376	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11990594	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12545946	0.82[AFR][1000 genomes]
rs3779776	0.82[AFR][1000 genomes]
rs61430165	0.86[AFR][1000 genomes]
rs73305056	0.85[AFR][1000 genomes]
rs73305060	0.82[AFR][1000 genomes]
rs73305093	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv831418	chr8:106648456-106833333	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv891260	chr8:106737459-106808078	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106729200-106742600	Weak transcription	Right Ventricle	heart
2	chr8:106734200-106743200	Weak transcription	Aorta	Aorta
3	chr8:106735400-106742200	Weak transcription	K562	blood
4	chr8:106736000-106742600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:106738000-106742600	Weak transcription	Adipose Nuclei	Adipose
6	chr8:106738400-106742400	Weak transcription	Fetal Lung	lung
7	chr8:106739000-106742400	Weak transcription	Colon Smooth Muscle	Colon
8	chr8:106739200-106742600	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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