Variant report

Variant	rs11997683
Chromosome Location	chr8:105326729-105326730
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11987575	1.00[ASN][1000 genomes]
rs11995522	0.82[ASN][1000 genomes]
rs11998541	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56405431	0.82[ASN][1000 genomes]
rs56663074	0.82[ASN][1000 genomes]
rs57341357	0.82[ASN][1000 genomes]
rs57451892	0.82[ASN][1000 genomes]
rs60223253	0.92[ASN][1000 genomes]
rs6991467	0.84[ASN][1000 genomes]
rs73300652	0.82[ASN][1000 genomes]
rs73300656	0.82[ASN][1000 genomes]
rs73300670	0.92[ASN][1000 genomes]
rs73300671	0.92[ASN][1000 genomes]
rs73300688	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73300690	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73302609	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105326600-105327200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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