Variant report

Variant	rs56663074
Chromosome Location	chr8:105296445-105296446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11987575	0.82[ASN][1000 genomes]
rs11995522	1.00[ASN][1000 genomes]
rs11997683	0.82[ASN][1000 genomes]
rs11998541	0.82[ASN][1000 genomes]
rs56405431	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57341357	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57451892	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60223253	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6991467	0.84[ASN][1000 genomes]
rs73300652	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73300656	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73300670	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73300671	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73300688	0.92[ASN][1000 genomes]
rs73300690	0.92[ASN][1000 genomes]
rs73302609	0.92[ASN][1000 genomes]
rs73699133	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105295200-105296600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:105295200-105296800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:105295800-105296600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:105296400-105296600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr8:105296400-105296800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr8:105296400-105296800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:105296400-105297000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:105296400-105297200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:105296400-105297400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:105296400-105297400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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