Variant report

Variant	rs11998441
Chromosome Location	chr8:46857243-46857244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 132 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs11985637	1.00[AMR][1000 genomes]
rs11986762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11987241	1.00[AMR][1000 genomes]
rs11987346	1.00[AMR][1000 genomes]
rs11988704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989638	1.00[AMR][1000 genomes]
rs11989667	1.00[AMR][1000 genomes]
rs11990083	1.00[AMR][1000 genomes]
rs11990551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11992912	1.00[AMR][1000 genomes]
rs11994742	1.00[AMR][1000 genomes]
rs11995454	1.00[AMR][1000 genomes]
rs11995763	1.00[AMR][1000 genomes]
rs11997366	1.00[AMR][1000 genomes]
rs11997556	1.00[AMR][1000 genomes]
rs11998481	1.00[AMR][1000 genomes]
rs56712307	1.00[AMR][1000 genomes]
rs58337750	1.00[AMR][1000 genomes]
rs58391227	1.00[AMR][1000 genomes]
rs58586006	1.00[AMR][1000 genomes]
rs58747556	1.00[AMR][1000 genomes]
rs59515337	1.00[AMR][1000 genomes]
rs59538766	1.00[AMR][1000 genomes]
rs60221155	1.00[AMR][1000 genomes]
rs61425446	1.00[AMR][1000 genomes]
rs73562706	1.00[AMR][1000 genomes]
rs73562708	1.00[AMR][1000 genomes]
rs73562715	1.00[AMR][1000 genomes]
rs73562729	1.00[AMR][1000 genomes]
rs73562732	1.00[AMR][1000 genomes]
rs73562737	1.00[AMR][1000 genomes]
rs73562738	1.00[AMR][1000 genomes]
rs73562743	1.00[AMR][1000 genomes]
rs73562744	1.00[AMR][1000 genomes]
rs73562745	1.00[AMR][1000 genomes]
rs73562748	1.00[AMR][1000 genomes]
rs73562749	1.00[AMR][1000 genomes]
rs73562752	1.00[AMR][1000 genomes]
rs73562760	1.00[AMR][1000 genomes]
rs73562769	1.00[AMR][1000 genomes]
rs73562771	1.00[AMR][1000 genomes]
rs73562774	1.00[AMR][1000 genomes]
rs73562777	1.00[AMR][1000 genomes]
rs73562794	1.00[AMR][1000 genomes]
rs73566792	1.00[AMR][1000 genomes]
rs73566797	1.00[AMR][1000 genomes]
rs73566799	1.00[AMR][1000 genomes]
rs73568608	1.00[AMR][1000 genomes]
rs73568613	1.00[AMR][1000 genomes]
rs73568618	1.00[AMR][1000 genomes]
rs73568621	1.00[AMR][1000 genomes]
rs73568642	1.00[AMR][1000 genomes]
rs73568646	1.00[AMR][1000 genomes]
rs73568656	1.00[AMR][1000 genomes]
rs73568661	1.00[AMR][1000 genomes]
rs73568675	1.00[AMR][1000 genomes]
rs73568681	1.00[AMR][1000 genomes]
rs73568682	1.00[AMR][1000 genomes]
rs73568684	1.00[AMR][1000 genomes]
rs73570610	1.00[AMR][1000 genomes]
rs73570618	1.00[AMR][1000 genomes]
rs73570620	1.00[AMR][1000 genomes]
rs73570622	1.00[AMR][1000 genomes]
rs73570623	1.00[AMR][1000 genomes]
rs73570636	1.00[AMR][1000 genomes]
rs73570637	1.00[AMR][1000 genomes]
rs73570660	1.00[AMR][1000 genomes]
rs73570662	1.00[AMR][1000 genomes]
rs73570664	1.00[AMR][1000 genomes]
rs73570668	1.00[AMR][1000 genomes]
rs73570672	1.00[AMR][1000 genomes]
rs73570678	1.00[AMR][1000 genomes]
rs73572605	1.00[AMR][1000 genomes]
rs73572610	1.00[AMR][1000 genomes]
rs73572659	1.00[AMR][1000 genomes]
rs73574733	1.00[AMR][1000 genomes]
rs73574735	1.00[AMR][1000 genomes]
rs73574739	1.00[AMR][1000 genomes]
rs73574756	1.00[AMR][1000 genomes]
rs73574765	1.00[AMR][1000 genomes]
rs73574769	1.00[AMR][1000 genomes]
rs73574771	1.00[AMR][1000 genomes]
rs73576744	1.00[AMR][1000 genomes]
rs73576746	1.00[AMR][1000 genomes]
rs73576753	1.00[AMR][1000 genomes]
rs73576767	1.00[AMR][1000 genomes]
rs73578705	1.00[AMR][1000 genomes]
rs73578707	1.00[AMR][1000 genomes]
rs73578716	1.00[AMR][1000 genomes]
rs73578719	1.00[AMR][1000 genomes]
rs73578728	1.00[AMR][1000 genomes]
rs73578748	1.00[AMR][1000 genomes]
rs73580816	1.00[AMR][1000 genomes]
rs73580817	1.00[AMR][1000 genomes]
rs73580842	1.00[AMR][1000 genomes]
rs73580851	1.00[AMR][1000 genomes]
rs73580858	1.00[AMR][1000 genomes]
rs73580862	1.00[AMR][1000 genomes]
rs73580865	1.00[AMR][1000 genomes]
rs73580866	1.00[AMR][1000 genomes]
rs73580870	1.00[AMR][1000 genomes]
rs8185766	1.00[AMR][1000 genomes]
rs8185879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15439	chr8:46838946-46857964	Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv820693	chr8:46838946-46857964	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv611221	chr8:46839108-46857680	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv611222	chr8:46839108-46886735	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv611223	chr8:46839108-46902917	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv611224	chr8:46840092-46902917	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv611225	chr8:46842136-46857680	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611226	chr8:46842136-46886735	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611228	chr8:46843244-46857680	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3480442	chr8:46845338-46888077	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3480443	chr8:46845338-46888077	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv1018373	chr8:46847522-46863523	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv1026441	chr8:46847522-46912015	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1031442	chr8:46847522-46927075	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv1018446	chr8:46847522-46933024	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1034986	chr8:46847522-46936604	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv1033056	chr8:46847522-46954695	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
18	nsv1017900	chr8:46847522-47024380	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
19	nsv1028273	chr8:46847522-47063432	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
20	nsv1022441	chr8:46847522-47175405	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
21	nsv1020385	chr8:46847522-47199227	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
22	nsv1026941	chr8:46847522-47203990	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
23	nsv1031996	chr8:46847522-47361594	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv1018413	chr8:46847522-47436605	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
25	nsv1030943	chr8:46847522-47517000	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv1031244	chr8:46847522-47735165	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
27	nsv1032451	chr8:46847522-47743250	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
28	nsv1018479	chr8:46847522-47776897	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
29	esv2761184	chr8:46847534-47743262	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:46854400-46857600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
2	chr8:46856200-46857400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr8:46856200-46857400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr8:46856200-46857400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr8:46856200-46857600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:46856200-46857600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:46856200-46857600	ZNF genes & repeats	Aorta	Aorta
8	chr8:46856200-46857600	ZNF genes & repeats	Liver	Liver
9	chr8:46856200-46857600	ZNF genes & repeats	Left Ventricle	heart
10	chr8:46856200-46857600	ZNF genes & repeats	Psoas Muscle	Psoas
11	chr8:46856200-46857600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
12	chr8:46856600-46868600	Weak transcription	NHLF	lung
13	chr8:46856800-46857600	Weak transcription	K562	blood
14	chr8:46856800-46861400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:46856800-46861400	Weak transcription	HSMMtube	muscle
16	chr8:46856800-46861400	Weak transcription	HUVEC	blood vessel
17	chr8:46856800-46868600	Weak transcription	Right Ventricle	heart
18	chr8:46856800-46868600	Weak transcription	NHDF-Ad	bronchial
19	chr8:46857000-46857400	Weak transcription	Gastric	stomach
20	chr8:46857000-46858000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr8:46857000-46861400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr8:46857000-46861400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:46857000-46861400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr8:46857000-46861400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:46857000-46861400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr8:46857000-46861400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:46857000-46861400	Weak transcription	Colon Smooth Muscle	Colon
28	chr8:46857000-46861400	Weak transcription	Fetal Heart	heart
29	chr8:46857000-46861400	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:46857000-46861400	Weak transcription	Fetal Lung	lung
31	chr8:46857000-46861600	Weak transcription	Hela-S3	cervix
32	chr8:46857000-46863600	Weak transcription	NH-A	brain
33	chr8:46857000-46868600	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr8:46857000-46868600	Weak transcription	Brain Angular Gyrus	brain
35	chr8:46857000-46868600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:46857000-46868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:46857000-46868600	Weak transcription	GM12878-XiMat	blood
38	chr8:46857000-46868600	Weak transcription	HepG2	liver

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