Variant report

Variant	rs56712307
Chromosome Location	chr8:43764899-43764900
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 162 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11985637	1.00[AMR][1000 genomes]
rs11986762	1.00[AMR][1000 genomes]
rs11987241	1.00[AMR][1000 genomes]
rs11987346	1.00[AMR][1000 genomes]
rs11988704	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11989638	1.00[AMR][1000 genomes]
rs11989667	1.00[AMR][1000 genomes]
rs11990083	1.00[AMR][1000 genomes]
rs11990551	1.00[AMR][1000 genomes]
rs11992912	1.00[AMR][1000 genomes]
rs11994742	1.00[AMR][1000 genomes]
rs11995454	1.00[AMR][1000 genomes]
rs11995763	1.00[AMR][1000 genomes]
rs11997366	1.00[AMR][1000 genomes]
rs11997556	1.00[AMR][1000 genomes]
rs11998441	1.00[AMR][1000 genomes]
rs11998481	1.00[AMR][1000 genomes]
rs58337750	1.00[AMR][1000 genomes]
rs58586006	1.00[AMR][1000 genomes]
rs58747556	1.00[AMR][1000 genomes]
rs59538766	1.00[AMR][1000 genomes]
rs60221155	1.00[AMR][1000 genomes]
rs61425446	1.00[AMR][1000 genomes]
rs73562706	1.00[AMR][1000 genomes]
rs73562708	1.00[AMR][1000 genomes]
rs73562715	1.00[AMR][1000 genomes]
rs73562729	1.00[AMR][1000 genomes]
rs73562732	1.00[AMR][1000 genomes]
rs73564447	1.00[AMR][1000 genomes]
rs73564455	1.00[AMR][1000 genomes]
rs73564457	1.00[AMR][1000 genomes]
rs73564459	1.00[AMR][1000 genomes]
rs73566792	1.00[AMR][1000 genomes]
rs73566797	1.00[AMR][1000 genomes]
rs73566799	1.00[AMR][1000 genomes]
rs73568608	1.00[AMR][1000 genomes]
rs73568613	1.00[AMR][1000 genomes]
rs73568618	1.00[AMR][1000 genomes]
rs73568621	1.00[AMR][1000 genomes]
rs73568642	1.00[AMR][1000 genomes]
rs73568646	1.00[AMR][1000 genomes]
rs73568656	1.00[AMR][1000 genomes]
rs73568661	1.00[AMR][1000 genomes]
rs73568675	1.00[AMR][1000 genomes]
rs73568681	1.00[AMR][1000 genomes]
rs73568682	1.00[AMR][1000 genomes]
rs73568684	1.00[AMR][1000 genomes]
rs73570610	1.00[AMR][1000 genomes]
rs73570618	1.00[AMR][1000 genomes]
rs73570620	1.00[AMR][1000 genomes]
rs73570622	1.00[AMR][1000 genomes]
rs73570623	1.00[AMR][1000 genomes]
rs73570636	1.00[AMR][1000 genomes]
rs73570637	1.00[AMR][1000 genomes]
rs73570660	1.00[AMR][1000 genomes]
rs73570662	1.00[AMR][1000 genomes]
rs73570664	1.00[AMR][1000 genomes]
rs73570668	1.00[AMR][1000 genomes]
rs73570672	1.00[AMR][1000 genomes]
rs73570678	1.00[AMR][1000 genomes]
rs73572605	1.00[AMR][1000 genomes]
rs73572610	1.00[AMR][1000 genomes]
rs73572659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73574733	1.00[AMR][1000 genomes]
rs73574735	1.00[AMR][1000 genomes]
rs73574739	1.00[AMR][1000 genomes]
rs73574756	1.00[AMR][1000 genomes]
rs73574765	1.00[AMR][1000 genomes]
rs73574769	1.00[AMR][1000 genomes]
rs73574771	1.00[AMR][1000 genomes]
rs73576744	1.00[AMR][1000 genomes]
rs73576746	1.00[AMR][1000 genomes]
rs73576753	1.00[AMR][1000 genomes]
rs73576767	1.00[AMR][1000 genomes]
rs73578705	1.00[AMR][1000 genomes]
rs73578707	1.00[AMR][1000 genomes]
rs73578716	1.00[AMR][1000 genomes]
rs73578719	1.00[AMR][1000 genomes]
rs73578728	1.00[AMR][1000 genomes]
rs73578748	1.00[AMR][1000 genomes]
rs73580816	1.00[AMR][1000 genomes]
rs73580817	1.00[AMR][1000 genomes]
rs73580842	1.00[AMR][1000 genomes]
rs73580851	1.00[AMR][1000 genomes]
rs73580858	1.00[AMR][1000 genomes]
rs73580862	1.00[AMR][1000 genomes]
rs73580865	1.00[AMR][1000 genomes]
rs73580866	1.00[AMR][1000 genomes]
rs73580870	1.00[AMR][1000 genomes]
rs8185766	1.00[AMR][1000 genomes]
rs8185879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:71 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021734	chr8:42936943-43824036	Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv470208	chr8:42937608-43791691	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv1025569	chr8:42985051-43824036	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
4	nsv519841	chr8:43024625-43791691	Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
5	nsv465640	chr8:43024625-43791691	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
6	nsv465641	chr8:43024625-43791691	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
7	nsv465642	chr8:43024625-43791691	Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
8	nsv465643	chr8:43024625-43791691	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
9	nsv611144	chr8:43024625-43791691	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
10	nsv1034852	chr8:43025754-43824036	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
11	nsv611145	chr8:43027010-43791691	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
12	nsv1029910	chr8:43057794-43824036	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
13	nsv611146	chr8:43058385-43792571	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
14	nsv1034685	chr8:43061933-43824036	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
15	nsv611148	chr8:43092749-43792571	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
16	nsv465645	chr8:43124666-43791691	Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
17	nsv611149	chr8:43124666-43791691	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv1026805	chr8:43144392-43786790	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
19	nsv465647	chr8:43198953-43791691	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	nsv465648	chr8:43198953-43791691	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
21	nsv611151	chr8:43198953-43791691	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
22	nsv1025517	chr8:43327179-43824036	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1029702	chr8:43367207-43786790	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv1034871	chr8:43367207-43824036	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1020744	chr8:43385088-43786790	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
26	nsv1021643	chr8:43385088-43824036	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv1027793	chr8:43387474-43824036	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
28	nsv1024211	chr8:43396560-43824036	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
29	nsv981873	chr8:43396710-43838887	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
30	nsv1024931	chr8:43407862-43824036	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
31	nsv1015143	chr8:43413955-43824036	Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	esv21315	chr8:43415270-43820710	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
33	nsv1016955	chr8:43420805-43786790	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv1021973	chr8:43420805-43824036	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
35	nsv611153	chr8:43431225-43792571	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
36	nsv1021699	chr8:43438902-43824036	Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
37	nsv1023005	chr8:43442235-43824036	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
38	nsv1030594	chr8:43446268-43767214	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
39	nsv1015775	chr8:43455243-43824036	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
40	nsv1024351	chr8:43472618-43824036	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
41	nsv1028059	chr8:43481718-43824036	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
42	nsv1017634	chr8:43483574-43824036	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
43	nsv1025109	chr8:43487659-43824036	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
44	nsv1021576	chr8:43499017-43824036	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
45	nsv1025504	chr8:43499911-43824036	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
46	nsv1025480	chr8:43504529-43824036	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
47	nsv1023266	chr8:43520355-43824036	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
48	nsv465652	chr8:43539041-43791691	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv611160	chr8:43539041-43791691	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv1019073	chr8:43556092-43767214	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:43760400-43768200	Weak transcription	K562	blood
2	chr8:43761800-43767000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:43761800-43767000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr8:43761800-43767000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr8:43761800-43767200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr8:43762000-43767200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr8:43762800-43768200	Weak transcription	Small Intestine	intestine
8	chr8:43763800-43768200	Weak transcription	Aorta	Aorta
9	chr8:43764400-43768200	Weak transcription	Osteobl	bone

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