Variant report

Variant	rs11998888
Chromosome Location	chr9:96592599-96592600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12004823	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12005940	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12336091	1.00[EUR][1000 genomes]
rs56898391	1.00[EUR][1000 genomes]
rs59257911	1.00[EUR][1000 genomes]
rs59436086	1.00[EUR][1000 genomes]
rs7022883	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035518	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043828	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653120	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653121	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1824724	chr9:96582360-96598551	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96590200-96593000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr9:96590200-96593200	Enhancers	Fetal Lung	lung
3	chr9:96590600-96594800	Weak transcription	Spleen	Spleen
4	chr9:96590800-96592800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96591400-96593200	Enhancers	Ovary	ovary
6	chr9:96591600-96593600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:96592000-96593000	Enhancers	Fetal Stomach	stomach
8	chr9:96592200-96594600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:96592400-96593000	Flanking Active TSS	Stomach Smooth Muscle	stomach
10	chr9:96592400-96593400	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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