Variant report

Variant	rs56898391
Chromosome Location	chr9:96493436-96493437
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11998888	1.00[EUR][1000 genomes]
rs12004823	1.00[EUR][1000 genomes]
rs12005940	1.00[EUR][1000 genomes]
rs12115703	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12115805	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12336091	1.00[EUR][1000 genomes]
rs16909421	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59257911	1.00[EUR][1000 genomes]
rs59436086	1.00[EUR][1000 genomes]
rs7022883	1.00[EUR][1000 genomes]
rs7035518	1.00[EUR][1000 genomes]
rs7043828	1.00[EUR][1000 genomes]
rs73653120	1.00[EUR][1000 genomes]
rs73653121	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv1805275	chr9:96470473-96501599	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1832783	chr9:96470686-96501599	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1798985	chr9:96470848-96501850	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1799910	chr9:96470848-96501905	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96490200-96494000	Enhancers	Fetal Stomach	stomach
2	chr9:96492800-96493800	Enhancers	Stomach Smooth Muscle	stomach
3	chr9:96493400-96493600	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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