Variant report

Variant	rs1199973
Chromosome Location	chr13:37626835-37626836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37623154..37627284-chr13:37630471..37633979,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102710	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10507444	0.84[AFR][1000 genomes]
rs1199957	0.95[AFR][1000 genomes]
rs1199965	0.90[AFR][1000 genomes]
rs1199971	0.82[AFR][1000 genomes]
rs1208131	0.85[AFR][1000 genomes]
rs17054770	0.84[AFR][1000 genomes]
rs17054775	0.83[AFR][1000 genomes]
rs1764485	0.83[AFR][1000 genomes]
rs2485063	0.95[AFR][1000 genomes]
rs28542891	0.87[AFR][1000 genomes]
rs57549356	0.90[AFR][1000 genomes]
rs57670680	0.87[AFR][1000 genomes]
rs58282483	0.85[AFR][1000 genomes]
rs58470119	0.85[AFR][1000 genomes]
rs7329124	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37575400-37631200	Weak transcription	Stomach Mucosa	stomach
2	chr13:37606800-37632400	Weak transcription	Hela-S3	cervix
3	chr13:37607800-37631000	Weak transcription	Pancreas	Pancrea
4	chr13:37608800-37631800	Weak transcription	Psoas Muscle	Psoas
5	chr13:37610000-37631000	Weak transcription	Lung	lung
6	chr13:37610000-37632200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:37610600-37632000	Weak transcription	Small Intestine	intestine
8	chr13:37611400-37631000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:37613600-37632400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:37613600-37632600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr13:37616400-37632200	Weak transcription	A549	lung
12	chr13:37616800-37631000	Weak transcription	Right Ventricle	heart
13	chr13:37616800-37632200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:37616800-37632200	Weak transcription	NHLF	lung
15	chr13:37617000-37627000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr13:37617000-37632400	Weak transcription	K562	blood
17	chr13:37617400-37631000	Weak transcription	NHEK	skin
18	chr13:37617600-37632600	Weak transcription	Brain Substantia Nigra	brain
19	chr13:37617600-37632800	Weak transcription	Brain Hippocampus Middle	brain
20	chr13:37617600-37632800	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr13:37617600-37632800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr13:37617800-37631800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr13:37618000-37627400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr13:37618000-37631800	Weak transcription	Gastric	stomach
25	chr13:37618000-37632200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr13:37618000-37632400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr13:37618000-37632400	Weak transcription	Brain Angular Gyrus	brain
28	chr13:37618000-37632400	Weak transcription	Fetal Kidney	kidney
29	chr13:37618000-37632600	Weak transcription	Thymus	Thymus
30	chr13:37618000-37632800	Weak transcription	Ovary	ovary
31	chr13:37618000-37633000	Weak transcription	Spleen	Spleen
32	chr13:37618200-37630600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr13:37618200-37630800	Weak transcription	Fetal Stomach	stomach
34	chr13:37618200-37630800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr13:37618200-37631000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr13:37618200-37631000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:37618200-37632200	Weak transcription	Brain Germinal Matrix	brain
38	chr13:37618200-37632400	Weak transcription	Fetal Brain Male	brain
39	chr13:37618200-37632600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr13:37618200-37633000	Weak transcription	Esophagus	oesophagus
41	chr13:37618800-37632200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr13:37619400-37632000	Weak transcription	Fetal Heart	heart
43	chr13:37619600-37631800	Weak transcription	HepG2	liver
44	chr13:37620800-37631800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr13:37620800-37632200	Weak transcription	Brain Anterior Caudate	brain
46	chr13:37621200-37627200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr13:37621200-37631000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr13:37621600-37627200	Weak transcription	Fetal Lung	lung
49	chr13:37621600-37627400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr13:37621600-37630600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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