Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37633161..37634967-chr13:37644418..37646068,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102710	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10507444	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs1199957	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs1199961	0.83[AFR][1000 genomes]
rs1199964	0.83[AMR][1000 genomes]
rs1199965	0.83[AFR][1000 genomes]
rs1199967	0.83[AMR][1000 genomes]
rs1199970	0.83[AMR][1000 genomes]
rs1199971	0.80[AFR][1000 genomes]
rs1199973	0.85[AFR][1000 genomes]
rs1199985	0.80[YRI][hapmap]
rs1211337	0.83[AMR][1000 genomes]
rs1627791	0.83[AFR][1000 genomes]
rs17054770	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs17054775	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs17054796	0.83[AMR][1000 genomes]
rs17054800	1.00[AMR][1000 genomes]
rs17054831	0.83[AMR][1000 genomes]
rs1764485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1781658	0.83[AMR][1000 genomes]
rs2485063	0.86[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2670058	0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs28542891	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57549356	0.83[AFR][1000 genomes]
rs57670680	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58282483	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58470119	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320568	0.83[AMR][1000 genomes]
rs7329124	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7995985	0.83[AMR][1000 genomes]
rs8000672	0.83[AMR][1000 genomes]
rs8001724	0.83[AMR][1000 genomes]
rs9285111	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3377840	chr13:37631001-37656330	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37644600-37647000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:37645000-37646800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:37645800-37646600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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