Variant report

Variant	rs1781658
Chromosome Location	chr13:37639306-37639307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1199985	0.90[AFR][1000 genomes]
rs1208131	0.83[AMR][1000 genomes]
rs17054800	0.83[AMR][1000 genomes]
rs1764485	0.83[AMR][1000 genomes]
rs2485063	0.83[AMR][1000 genomes]
rs2670058	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28542891	0.83[AMR][1000 genomes]
rs57670680	0.83[AMR][1000 genomes]
rs58282483	0.83[AMR][1000 genomes]
rs58470119	0.83[AMR][1000 genomes]
rs7329124	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv3377840	chr13:37631001-37656330	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37634200-37640200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:37634400-37639800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:37634400-37640200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:37634600-37643800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:37634800-37640200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:37638800-37639400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:37639000-37640800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:37639200-37640800	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links