Variant report

Variant	rs9285111
Chromosome Location	chr13:37622950-37622951
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37573365..37576545-chr13:37622810..37625636,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120699	Chromatin interaction
ENSG00000120697	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1199957	0.82[YRI][hapmap]
rs1199964	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1199967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1199970	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208131	0.83[AMR][1000 genomes]
rs1211337	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054769	1.00[EUR][1000 genomes]
rs17054795	1.00[EUR][1000 genomes]
rs17054796	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054800	0.83[AMR][1000 genomes]
rs17054804	1.00[EUR][1000 genomes]
rs17054810	1.00[EUR][1000 genomes]
rs17054831	1.00[ASW][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054863	1.00[EUR][1000 genomes]
rs1764485	0.83[AMR][1000 genomes]
rs2323392	0.80[AFR][1000 genomes]
rs2485063	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs28542891	0.83[AMR][1000 genomes]
rs57670680	0.83[AMR][1000 genomes]
rs58282483	0.83[AMR][1000 genomes]
rs58470119	0.83[AMR][1000 genomes]
rs6563509	0.84[AFR][1000 genomes]
rs7320568	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329124	0.83[AMR][1000 genomes]
rs7329314	0.81[AFR][1000 genomes]
rs7338929	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs7995985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999226	1.00[EUR][1000 genomes]
rs8000672	0.92[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001724	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37575400-37631200	Weak transcription	Stomach Mucosa	stomach
2	chr13:37576200-37623800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:37576400-37623800	Strong transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:37576600-37623000	Strong transcription	Liver	Liver
5	chr13:37576600-37625800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr13:37576800-37623200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:37577000-37623000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:37577000-37623400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr13:37577000-37624400	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr13:37577200-37623200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr13:37577200-37625200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr13:37577200-37625800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:37577200-37625800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr13:37577600-37623600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr13:37583000-37623400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr13:37586800-37623400	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr13:37589200-37625800	Strong transcription	Fetal Thymus	thymus
18	chr13:37589600-37623800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:37599600-37623000	Strong transcription	HSMM	muscle
20	chr13:37601800-37625200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr13:37604200-37623600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr13:37604800-37623600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:37606800-37632400	Weak transcription	Hela-S3	cervix
24	chr13:37607800-37631000	Weak transcription	Pancreas	Pancrea
25	chr13:37608400-37624000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:37608800-37631800	Weak transcription	Psoas Muscle	Psoas
27	chr13:37610000-37631000	Weak transcription	Lung	lung
28	chr13:37610000-37632200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr13:37610200-37623200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr13:37610200-37626000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:37610600-37632000	Weak transcription	Small Intestine	intestine
32	chr13:37610800-37625800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr13:37611400-37623400	Strong transcription	GM12878-XiMat	blood
34	chr13:37611400-37631000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:37613600-37632400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr13:37613600-37632600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr13:37616400-37632200	Weak transcription	A549	lung
38	chr13:37616800-37631000	Weak transcription	Right Ventricle	heart
39	chr13:37616800-37632200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr13:37616800-37632200	Weak transcription	NHLF	lung
41	chr13:37617000-37627000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr13:37617000-37632400	Weak transcription	K562	blood
43	chr13:37617400-37631000	Weak transcription	NHEK	skin
44	chr13:37617600-37623600	Strong transcription	HUVEC	blood vessel
45	chr13:37617600-37632600	Weak transcription	Brain Substantia Nigra	brain
46	chr13:37617600-37632800	Weak transcription	Brain Hippocampus Middle	brain
47	chr13:37617600-37632800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr13:37617600-37632800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr13:37617800-37631800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr13:37618000-37627400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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