Variant report

Variant	rs1211337
Chromosome Location	chr13:37617299-37617300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37615714..37619674-chr13:37631540..37634890,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000102710	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1199957	0.82[YRI][hapmap]
rs1199964	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1199967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1199970	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1208131	0.83[AMR][1000 genomes]
rs17054769	1.00[EUR][1000 genomes]
rs17054795	1.00[EUR][1000 genomes]
rs17054796	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054800	0.83[AMR][1000 genomes]
rs17054804	1.00[EUR][1000 genomes]
rs17054810	1.00[EUR][1000 genomes]
rs17054831	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054863	1.00[EUR][1000 genomes]
rs1764485	0.83[AMR][1000 genomes]
rs2323392	0.80[AFR][1000 genomes]
rs2485063	0.82[YRI][hapmap];0.83[AMR][1000 genomes]
rs28542891	0.83[AMR][1000 genomes]
rs57670680	0.83[AMR][1000 genomes]
rs58282483	0.83[AMR][1000 genomes]
rs58470119	0.83[AMR][1000 genomes]
rs6563509	0.84[AFR][1000 genomes]
rs7320568	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7329124	0.83[AMR][1000 genomes]
rs7329314	0.81[AFR][1000 genomes]
rs7338929	0.83[YRI][hapmap];0.82[AFR][1000 genomes]
rs7995985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999226	1.00[EUR][1000 genomes]
rs8000672	1.00[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8001724	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9285111	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37575400-37631200	Weak transcription	Stomach Mucosa	stomach
2	chr13:37576200-37623800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:37576400-37618800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:37576400-37623800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:37576600-37623000	Strong transcription	Liver	Liver
6	chr13:37576600-37625800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr13:37576800-37621200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:37576800-37623200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr13:37577000-37623000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:37577000-37623400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr13:37577000-37624400	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:37577200-37623200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr13:37577200-37625200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr13:37577200-37625800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:37577200-37625800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr13:37577600-37623600	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr13:37581800-37622800	Strong transcription	Dnd41	blood
18	chr13:37583000-37622800	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr13:37583000-37623400	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr13:37583200-37622600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr13:37586800-37623400	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr13:37587000-37622200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr13:37587800-37618000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr13:37587800-37622600	Strong transcription	Duodenum Mucosa	Duodenum
25	chr13:37588400-37622400	Strong transcription	Adipose Nuclei	Adipose
26	chr13:37588600-37619600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr13:37589200-37625800	Strong transcription	Fetal Thymus	thymus
28	chr13:37589400-37622600	Strong transcription	Placenta	Placenta
29	chr13:37589600-37623800	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr13:37592200-37622600	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr13:37592400-37618000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr13:37592400-37619400	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr13:37594600-37622400	Strong transcription	Primary B cells from cord blood	blood
34	chr13:37599600-37623000	Strong transcription	HSMM	muscle
35	chr13:37601000-37617600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr13:37601200-37618000	Strong transcription	Fetal Lung	lung
37	chr13:37601800-37625200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr13:37602200-37618000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr13:37602200-37621600	Strong transcription	Primary T cells from cord blood	blood
40	chr13:37602600-37621000	Strong transcription	Fetal Intestine Large	intestine
41	chr13:37602800-37622200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr13:37603600-37618200	Strong transcription	HMEC	breast
43	chr13:37603800-37617600	Strong transcription	Brain Hippocampus Middle	brain
44	chr13:37604200-37623600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr13:37604400-37622200	Strong transcription	NH-A	brain
46	chr13:37604400-37622800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr13:37604800-37622800	Strong transcription	Muscle Satellite Cultured Cells	--
48	chr13:37604800-37623600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr13:37605000-37622800	Strong transcription	Osteobl	bone
50	chr13:37605800-37618600	Strong transcription	Brain Anterior Caudate	brain

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