Variant report

Variant	rs1200092
Chromosome Location	chr1:169041171-169041172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1040506	0.92[EUR][1000 genomes]
rs1200089	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1200097	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1200099	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1200103	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1200105	0.89[EUR][1000 genomes]
rs1200106	0.87[EUR][1000 genomes]
rs1200108	0.87[EUR][1000 genomes]
rs1200114	0.86[EUR][1000 genomes]
rs1320974	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1575041	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1575042	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2982459	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2982461	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3007364	0.84[EUR][1000 genomes]
rs3007369	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3007370	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4656175	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv831858	chr1:169022383-169179068	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169029600-169041800	Weak transcription	Gastric	stomach
2	chr1:169040600-169041800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr1:169040600-169042200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:169041000-169042200	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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