Variant report

Variant	rs3007364
Chromosome Location	chr1:169018902-169018903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169017513..169019588-chr1:169039238..169042124,2	MCF-7	breast:
2	chr1:169012356..169014091-chr1:169018039..169020233,2	K562	blood:
3	chr1:169017872..169019428-chr1:169025687..169027196,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1040506	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200089	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200092	0.84[EUR][1000 genomes]
rs1200097	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200099	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1200103	0.84[EUR][1000 genomes]
rs1200105	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes]
rs1200108	0.96[CEU][hapmap];1.00[CHB][hapmap]
rs1200114	0.92[CEU][hapmap]
rs1200115	1.00[ASW][hapmap];0.88[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap]
rs1320973	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap]
rs1320974	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575041	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575042	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2982459	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2982461	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3007369	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3007370	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4656175	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	esv3522071	chr1:168978325-169339044	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3522072	chr1:168978325-169339044	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169011800-169028800	Weak transcription	Psoas Muscle	Psoas
2	chr1:169012800-169019400	Enhancers	GM12878-XiMat	blood
3	chr1:169015400-169021200	Weak transcription	Small Intestine	intestine
4	chr1:169017000-169019000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:169017200-169019400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:169017400-169019400	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:169017400-169019400	Enhancers	Brain Hippocampus Middle	brain
8	chr1:169017400-169019600	Enhancers	Brain Substantia Nigra	brain
9	chr1:169017800-169019400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr1:169017800-169020200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:169017800-169020600	Weak transcription	Fetal Intestine Small	intestine
12	chr1:169018000-169019800	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:169018000-169021400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:169018200-169019000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:169018200-169019200	Enhancers	Brain Angular Gyrus	brain
16	chr1:169018200-169020200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr1:169018200-169021000	Weak transcription	Stomach Mucosa	stomach
18	chr1:169018200-169021600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr1:169018200-169021600	Weak transcription	Colonic Mucosa	Colon
20	chr1:169018200-169022000	Weak transcription	Fetal Intestine Large	intestine
21	chr1:169018400-169019000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:169018400-169019000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr1:169018400-169019000	Enhancers	Lung	lung
24	chr1:169018400-169019200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:169018400-169021200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr1:169018600-169019000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:169018600-169019200	Enhancers	Brain Anterior Caudate	brain
28	chr1:169018600-169019200	Enhancers	Fetal Lung	lung
29	chr1:169018800-169019200	Enhancers	Pancreas	Pancrea

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