Variant report

Variant	rs12001227
Chromosome Location	chr9:7957084-7957085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10758917	1.00[ASN][1000 genomes]
rs10815722	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10815724	1.00[ASN][1000 genomes]
rs10815726	1.00[ASN][1000 genomes]
rs10815727	1.00[ASN][1000 genomes]
rs10976669	1.00[ASN][1000 genomes]
rs10976676	1.00[ASN][1000 genomes]
rs10976682	1.00[ASN][1000 genomes]
rs10976683	1.00[ASN][1000 genomes]
rs11998807	1.00[ASN][1000 genomes]
rs12000321	0.84[AFR][1000 genomes]
rs12003195	1.00[ASN][1000 genomes]
rs12342669	1.00[ASN][1000 genomes]
rs12350187	1.00[ASN][1000 genomes]
rs12350720	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12352724	1.00[ASN][1000 genomes]
rs13289584	1.00[ASN][1000 genomes]
rs34124804	1.00[ASN][1000 genomes]
rs34153396	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34212086	1.00[ASN][1000 genomes]
rs34496473	1.00[ASN][1000 genomes]
rs34620117	1.00[ASN][1000 genomes]
rs35225118	1.00[ASN][1000 genomes]
rs35535448	1.00[ASN][1000 genomes]
rs35744695	1.00[ASN][1000 genomes]
rs35934019	1.00[ASN][1000 genomes]
rs60233451	1.00[ASN][1000 genomes]
rs66548174	1.00[ASN][1000 genomes]
rs7020228	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7022096	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7022427	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7024995	1.00[ASN][1000 genomes]
rs7033361	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7043559	1.00[ASN][1000 genomes]
rs7047666	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71507623	1.00[ASN][1000 genomes]
rs7875894	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892218	chr9:7929372-7964559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7955800-7959000	Weak transcription	Dnd41	blood
2	chr9:7956600-7958400	Weak transcription	Fetal Thymus	thymus
3	chr9:7956800-7957200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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