Variant report

Variant	rs12352724
Chromosome Location	chr9:7947920-7947921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10758917	1.00[ASN][1000 genomes]
rs10815722	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815724	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815726	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10815727	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976669	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976676	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10976682	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10976683	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998807	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001227	1.00[ASN][1000 genomes]
rs12003195	1.00[ASN][1000 genomes]
rs12342669	1.00[ASN][1000 genomes]
rs12350187	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12350720	1.00[ASN][1000 genomes]
rs13289584	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34124804	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34153396	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34212086	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34496473	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34620117	1.00[ASN][1000 genomes]
rs35225118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35535448	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35744695	1.00[ASN][1000 genomes]
rs35934019	1.00[ASN][1000 genomes]
rs60233451	1.00[ASN][1000 genomes]
rs66548174	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020228	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022096	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022427	1.00[ASN][1000 genomes]
rs7024995	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033361	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043559	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047666	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71507623	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875894	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv8414	chr9:7827373-8511613	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv973468	chr9:7871815-7950706	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1024456	chr9:7887727-8157591	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv539979	chr9:7887727-8157591	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv892216	chr9:7910934-7985651	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv892217	chr9:7919153-7978514	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv471274	chr9:7925381-7953759	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv892218	chr9:7929372-7964559	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7938400-7952000	Weak transcription	Aorta	Aorta
2	chr9:7944400-7948200	Enhancers	Fetal Heart	heart
3	chr9:7946600-7948000	Enhancers	Thymus	Thymus
4	chr9:7946800-7948000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:7946800-7948000	Enhancers	Fetal Thymus	thymus
6	chr9:7946800-7948200	Enhancers	Dnd41	blood
7	chr9:7947000-7948000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:7947200-7948000	Enhancers	Primary B cells from peripheral blood	blood
9	chr9:7947200-7948000	Enhancers	Primary T cells from cord blood	blood
10	chr9:7947200-7948000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr9:7947600-7948000	Enhancers	Primary B cells from cord blood	blood
12	chr9:7947600-7948000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:7947600-7948000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr9:7947600-7948000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:7947600-7948000	Enhancers	Brain Cingulate Gyrus	brain

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