Variant report

Variant	rs12001853
Chromosome Location	chr9:73245255-73245256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10868861	0.82[ASN][1000 genomes]
rs12345213	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1538671	0.82[ASN][1000 genomes]
rs1953927	0.82[ASN][1000 genomes]
rs2027364	0.82[ASN][1000 genomes]
rs62545506	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560146	0.85[ASN][1000 genomes]
rs6560147	0.82[ASN][1000 genomes]
rs7024154	0.82[ASN][1000 genomes]
rs7036072	0.82[ASN][1000 genomes]
rs7036664	0.82[ASN][1000 genomes]
rs7039530	0.82[ASN][1000 genomes]
rs7040694	0.82[ASN][1000 genomes]
rs7040809	0.82[ASN][1000 genomes]
rs7041495	0.82[ASN][1000 genomes]
rs7045361	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73235200-73255400	Weak transcription	Brain Substantia Nigra	brain
2	chr9:73235400-73255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73237600-73256000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73242600-73245800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73243200-73252800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:73243400-73248800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr9:73243400-73254400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:73243600-73255400	Weak transcription	Psoas Muscle	Psoas
9	chr9:73245200-73246000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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