Variant report

Variant	rs12345213
Chromosome Location	chr9:73294910-73294911
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12001853	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17055668	0.96[ASN][1000 genomes]
rs17055711	0.96[ASN][1000 genomes]
rs17539677	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62543302	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62543303	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62543304	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62543305	0.86[ASN][1000 genomes]
rs62545506	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7045361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73292000-73295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:73292000-73297200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:73292200-73295200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:73292200-73297400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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