Variant report

Variant	rs17539677
Chromosome Location	chr9:73308650-73308651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12003443	0.83[EUR][1000 genomes]
rs12345213	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17055668	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055711	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17055748	0.85[EUR][1000 genomes]
rs55843997	0.85[EUR][1000 genomes]
rs62543302	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543304	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543305	0.86[ASN][1000 genomes]
rs62543770	0.89[EUR][1000 genomes]
rs62543771	0.89[EUR][1000 genomes]
rs62543772	0.89[EUR][1000 genomes]
rs62544536	0.85[EUR][1000 genomes]
rs62544538	0.85[EUR][1000 genomes]
rs7045361	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72727779	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv6556	chr9:73304158-73363098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73295800-73310400	Weak transcription	Pancreas	Pancrea
2	chr9:73305800-73311800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:73306600-73311000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:73308600-73309000	Enhancers	Fetal Heart	heart
5	chr9:73308600-73309200	Enhancers	Adipose Nuclei	Adipose
6	chr9:73308600-73309800	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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