Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10780965	0.85[ASN][1000 genomes]
rs12003443	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328144	0.88[ASN][1000 genomes]
rs1328145	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1328146	0.88[ASN][1000 genomes]
rs17055668	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17055711	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17055748	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17055804	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17539677	0.89[EUR][1000 genomes]
rs55843997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62543302	0.89[EUR][1000 genomes]
rs62543303	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62543304	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62543771	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62543772	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62544538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560153	0.85[ASN][1000 genomes]
rs72727779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72727795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv6556	chr9:73304158-73363098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv969739	chr9:73318954-73369474	Strong transcription Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73352800-73367600	Weak transcription	Fetal Kidney	kidney
2	chr9:73356000-73364800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73356600-73368800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:73356800-73376000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:73357800-73362600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73358600-73365400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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