Variant report

Variant	rs62543771
Chromosome Location	chr9:73363044-73363045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12003443	0.93[EUR][1000 genomes]
rs1328145	0.80[EUR][1000 genomes]
rs17055668	0.98[EUR][1000 genomes]
rs17055711	0.98[EUR][1000 genomes]
rs17055748	0.95[EUR][1000 genomes]
rs17055804	0.82[EUR][1000 genomes]
rs17539677	0.89[EUR][1000 genomes]
rs55843997	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62543302	0.89[EUR][1000 genomes]
rs62543303	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62543304	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62543770	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62543772	1.00[EUR][1000 genomes]
rs62544536	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62544538	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72727779	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs72727795	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv6556	chr9:73304158-73363098	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv969739	chr9:73318954-73369474	Strong transcription Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73352800-73367600	Weak transcription	Fetal Kidney	kidney
2	chr9:73356000-73364800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr9:73356600-73368800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:73356800-73376000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:73358600-73365400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:73361200-73364200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:73361400-73363400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr9:73361600-73369400	Weak transcription	Ovary	ovary
9	chr9:73361800-73365400	Weak transcription	Aorta	Aorta
10	chr9:73362000-73368600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73362600-73364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:73362800-73368400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links